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dc.contributor.authorTorkamanian-Afshar, Mahsaen_US
dc.contributor.authorLanjanian, Hosseinen_US
dc.contributor.authorNematzadeh, Sajjaden_US
dc.contributor.authorTabarzad, Maryamen_US
dc.contributor.authorNajafi, Alien_US
dc.contributor.authorKiani, Farzaden_US
dc.contributor.authorMasoudi-Nejad, Alien_US
dc.date.accessioned2020-06-01T10:19:25Z
dc.date.available2020-06-01T10:19:25Z
dc.date.issued2020en_US
dc.identifier.citationTorkamanian-Afshar, M., Lanjanian, H., Nematzadeh, S., Tabarzad, M., Najafi, A., Kiani, F., & Masoudi-Nejad, A. (2020). RPINBASE: An online toolbox to extract features for predicting RNA-protein interactions. Genomics, 112(3), 2623-2632. doi:10.1016/j.ygeno.2020.02.013en_US
dc.identifier.issn0888-7543
dc.identifier.issn1089-8646
dc.identifier.urihttp://dx.doi.org/10.1016/j.ygeno.2020.02.013
dc.identifier.urihttps://hdl.handle.net/20.500.12294/2461
dc.description.abstractFeature extraction is one of the most important preprocessing steps in predicting the interactions between RNAs and proteins by applying machine learning approaches. Despite many efforts in this area, still, no suitable structural feature extraction tool has been designed. Therefore, an online toolbox, named RPINBASE which can be applied to different scopes of biological applications, is introduced in this paper. This toolbox employs efficient nested queries that enhance the speed of the requests and produces desired features in the form of positive and negative samples. To show the capabilities of the proposed toolbox, the developed toolbox was investigated in the aptamer design problem, and the obtained results are discussed. RPINBASE is an online toolbox and is accessible at http://rpinbase.com.en_US
dc.language.isoengen_US
dc.publisherAcademic Press Inc Elsevier Scienceen_US
dc.relation.ispartofGenomicsen_US
dc.identifier.doi10.1016/j.ygeno.2020.02.013en_US
dc.identifier.doi10.1016/j.ygeno.2020.02.013
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectBiological Applicationsen_US
dc.subjectFeature Extractionen_US
dc.subjectMachine Learningen_US
dc.subjectRna-Protein Interactionsen_US
dc.subjectRPINBASEen_US
dc.titleRPINBASE: An online toolbox to extract features for predicting RNA-protein interactionsen_US
dc.typearticleen_US
dc.departmentMühendislik ve Mimarlık Fakültesi, Bilgisayar Mühendisliği Bölümüen_US
dc.identifier.volume112en_US
dc.identifier.issue3en_US
dc.identifier.startpage2623en_US
dc.identifier.endpage2632en_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US


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